PLANT BREEDING REVIEWS Volume 33 Plant Breeding Reviewsis sponsored by: American Society ofHorticultural Science Crop Science Societyof America Society ofAmerican Foresters National Council ofCommercial PlantBreeders International Society forHorticultural Science Editorial Board, Volume 33 I. I. Goldman C. H. Michler Rodomiro Ortiz PLANT BREEDING REVIEWS Volume 33 edited by Jules Janick Purdue University Copyright(cid:1)2010byWiley-Blackwell.Allrightsreserved. PublishedbyJohnWiley&Sons,Inc.,Hoboken,NewJersey PublishedsimultaneouslyinCanada Wiley-BlackwellisanimprintofJohnWiley&Sons,formedbythemergerofWiley’s globalScientific,Technical,andMedicalbusinesswithBlackwellPublishing. 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No warrantymaybecreatedorextendedbysalesrepresentativesorwrittensalesmaterials. Theadviceandstrategiescontainedhereinmaynotbesuitableforyoursituation. You shouldconsultwithaprofessionalwhereappropriate. Neitherthepublishernorauthor shallbeliableforanylossofprofitoranyothercommercialdamages,includingbutnot limitedtospecial,incidental,consequential,orotherdamages. Forgeneralinformationonourotherproductsandservicesorfortechnicalsupport, pleasecontactour CustomerCareDepartmentwithintheUnitedStatesat877-762-2974, outsidetheUnitedStatesat317-572-3993orfax317-572-4002. Wileyalsopublishesitsbooksinavarietyofelectronicformats.Somecontentthat appearsinprintmaynotbeavailableinelectronicformats.Formoreinformationabout Wileyproducts,visitourwebsiteatwww.wiley.com. LibraryofCongressCataloging-in-PublicationData ISBN 978-0-470-52585-2(cloth) ISSN 0730-2207 PrintedintheUnitedStatesofAmerica 10 9 8 7 6 5 4 3 2 1 Contents Contributors ix 1. Dedication: Major M. Goodman: Maize Geneticist and Breeder 1 James B.Holland and Paul T.Nelson I. Biographical Sketch 2 II. Scientific Achievements 4 III. Service toHumankind 16 IV. Mentor and Colleague 17 V. Publications ofMajor Goodman 19 Literature Cited 27 2. Enhancing Abiotic Stress Tolerance in Cereals Through Breeding and Transgenic Interventions 31 SangamDwivedi, HariUpadhyaya, Prasanta Subudhi, Chris Gehring, Vladimir Bajic, and Rodomiro Ortiz Abbreviations 32 I. Introduction 33 II. Natural Genetic Variations and Trait-Based Breeding 36 III. Enhancing Adaptation toAbiotic Stresses ThroughBreeding and Transgenic Intervention 65 IV. Outlook 90 Acknowledgments 92 Literature Cited 93 3. Verticillium Wilt in Solanaceous Crops 115 YanxinGao, Thomas A. Zitter,andRichard E.Veilleux I. Introduction 116 II. Causal Pathogen 117 v vi CONTENTS III. Host Plant Resistance 122 IV. Disease Management 125 V. Breeding Resistant Cultivars 127 Acknowledgments 136 LiteratureCited 136 4. Marker-Assisted Selection as a Component of Conventional Plant Breeding 145 P. K.Gupta, JitendraKumar,R.R.Mir, andAjay Kumar Abbreviations 146 I. Introduction 147 II. Selection ofTraits forMAS 150 III. Nature ofQTL 154 IV. Choice ofMarkers forMAS 157 V. Marker-TraitAssociations 159 VI. Theoretical Considerations forSuccessful MAS 164 VII. Different Breeding Schemes InvolvingMAS 169 VIII. Simultaneous QTLDetectionand MAS (AB-QTL and “Mapping-As-You-Go”Approaches) 183 IX. Gene Pyramiding 184 X. MAS inCombination With PhenotypicSelection 190 XI. Economics ofMAS 191 XII. Improved Germplasm and CultivarsUsing MAS 194 XIII. Limitations and Future Possibilities 196 XIV. Conclusions 198 LiteratureCited 199 5. Marker-Assisted Gene Pyramiding for Cultivar Development 219 GuoyouYe and Kevin F.Smith Abbreviations 220 I. Introduction 220 II. General Principles 222 III. Process ofDesigning aMarker-Based Gene-Pyramiding Strategy 226 IV. Guidelines forDesigningan Efficient Gene-Pyramiding Strategy 229 V. Main Factors AffectsGene Pyramiding 232 CONTENTS vii VI. Successful Applications ofGene Pyramiding inPractice 235 VII. Integrating Gene Discovery,Validation, andPyramiding 244 VIII. Summaryand Prospects 249 Literature Cited 252 6. Legume Genomics and Breeding 257 Rajeev K.Varshney,Mahendar Thundi, GregD. May, and Scott A. Jackson I. Introduction 258 II. Constraints inCropProduction 261 III. Genomic Resourcesin Legumes 266 IV. Trait Mappingand Marker-Assisted Selection 279 V. Summaryand Prospects 286 Acknowledgments 287 Literature Cited 287 7. Breeding American Chestnuts for Blight Resistance 305 Lisa M.Worthen,KeithE.Woeste,and Charles H.Michler I. Introduction 306 II. ChestnutGenetics 307 III. ChestnutBlight 309 IV. Blight-Resistance Breeding 311 V. Population Genetics ofHybridChestnut Reintroduction 314 VI. Conclusion 331 Literature Cited 333 Subject Index 341 Cumulative Subject Index 343 Cumulative Contributor Index 363 Contributors VladimirBajic UniversityoftheWesternCape,Belleville7535,SouthAfrica Sangam Dwivedi International Crops Research Institute for the Semi-Arid Tropics(ICRISAT),Patancheru,PO502324,India Yanxin Gao Department of Horticultural Sciences, New York State Agricul- turalExperimentStation,CornellUniversity,Geneva,NY14456 ChrisGehring UniversityoftheWesternCape,Belleville7535,SouthAfrica Charles H. Michler Department of Forestry and Natural Resources, Purdue University,WestLafayette,IN47907 P.K.Gupta MolecularBiologyLaboratory,DepartmentofGeneticsandPlant Breeding,CCSUniversity,Meerut250004,India James B. Holland USDA-ARS Plant Research Unit, North Carolina State University,DepartmentofCropScience,Raleigh,NC27695 ScottA.Jackson DepartmentofAgronomy,PurdueUniversity,WestLafayette, IN47907 AjayKumar MolecularBiologyLaboratory,DepartmentofGeneticsandPlant Breeding,CCSUniversity,Meerut250004,India Jitendra Kumar Molecular Biology Laboratory, Department of Genetics and PlantBreeding,CCSUniversity,Meerut250004,India Greg D. May National Center for Genome Resources (NGCR), Santa Fe, NM 87505 R. R. Mir Molecular Biology Laboratory, Department of Genetics and Plant Breeding,CCSUniversity,Meerut250004,India PaulT.Nelson NorthCarolinaStateUniversity,DepartmentofCropScience, Raleigh,NC27695 Rodomiro Ortiz International Maize and Wheat Improvement Center (CIMMYT),Apdo.0660Mexico,D.F.,Mexico KevinF.Smith HamiltonCentre,BiosciencesResearchDivision,TheDepart- mentofPrimaryIndustries,Hamilton,Vic3300,Australia Prasanta Subudhi Louisiana State University Agricultural Center, Baton Rouge,LA70803 Mahendar Thudi International Crops Research Institute for the Semi-Arid Tropics(ICRISAT),Patancheru,PO502324,India Hari Upadhyaya International Crops Research Institute for the Semi-Arid Tropics(ICRISAT),Patancheru,PO502324,India ix x CONTRIBUTORS RajeevK.Varshney InternationalCropsResearchInstitutefortheSemi-Arid Tropics(ICRISAT),Patancheru,PO502324,India RichardE.Veilleux DepartmentofHorticulture,VirginiaPolytechnicInstitute andStateUniversity,Blacksburg,VA 24061 Lisa M. Worthen Department of Forestry and Natural Resources, Purdue University,WestLafayette,IN 47907 KeithE.Woeste DepartmentofForestryandNaturalResources,PurdueUni- versity,WestLafayette,IN 47907 GuoyouYe CropResearchInformaticsLaboratory,InternationalRiceResearch Institute,DappoBox777,MetroManila,Philippines Thomas A. Zitter Departmentof Plant Pathology, Cornell University, Ithaca, NY14853 M.M. Goodman