INFECTIOUS ABORTION AND ASSOCIATED RISK FACTORS IN DAIRY CATTLE FARMS IN NAKURU DISTRICT, KENYA TEQUIERO ABUOM OKUMU BVM, M.SC. (University of Nairobi) A thesis submitted in fulfilment of the requirements for the degree of Doctor of Philosophy (Clinical Studies) University of Nairobi Faculty of Veterinary Medicine Department of Clinical Studies 2014 I DECLARATION This thesis is my original work and has not been presented for a degree in any other university __________________________________________ Tequiero Abuom Okumu, BVM, MSc. This thesis has been submitted for examination with our approval as university supervisors Supervisors Prof. NJENGA M. J. (B.V.M., M Sc., Ph.D.) Signed: ______________________Date: _______________ Prof. WABACHA J. K. (B.V.M., M Sc., Ph.D.) Signed: ______________________Date: _______________ DR. TSUMA V. T. (B.V.M., Dip Anim. Reprod., FRVCS., Ph.D.) Signed: ______________________Date: _______________ DEPARTMENT OF CLINICAL STUDIES UNIVERSITY OF NAIROBI Prof. JOHN VANLEEUWEN ( D.V.M., M.Sc., Ph.D.) Signed: ________________________Date _________________ ATLANTIC VETERINARY COLLEGE, UNIVERSITY OF PRINCE EDWARD ISLAND II DEDICATION To My wife Damaris and my family, The Okumu’s III TABLE OF CONTENTS DECLARATION ............................................................................................................................... II DEDICATION .............................................................................................................................. III TABLE OF CONTENTS .................................................................................................................... IV LIST OF TABLES .............................................................................................................................. IX LIST OF FIGURES ............................................................................................................................. XI ACKNOWLEDGEMENTS .............................................................................................................. XII LIST OF ABBREVIATIONS .......................................................................................................... XIV ABSTRACT ............................................................................................................................ XV CHAPTER ONE ........................................................................................................................... - 1 - 1. GENERAL INTRODUCTION ......................................................................................... - 1 - CHAPTER TWO ........................................................................................................................... - 3 - 2. LITERATURE REVIEW ................................................................................................. - 3 - 2.1 Bovine viral diarhoea (BVD) ............................................................................................ - 6 - 2.2 Brucellosis ......................................................................................................................... - 9 - 2.3 Neosporosis ..................................................................................................................... - 10 - 2.4 Hypothesis....................................................................................................................... - 13 - 2.5 Overall objective ............................................................................................................. - 13 - 2.6 Specific objectives .......................................................................................................... - 13 - 2.7 Justification ..................................................................................................................... - 14 - CHAPTER THREE ........................................................................................................................ - 15 - 3 MATERIALS AND METHODS .................................................................................... - 15 - 3.1 Study area ........................................................................................................................ - 15 - 3.2 Selection of study farms and animals ............................................................................. - 16 - 3.3 Study design .................................................................................................................... - 17 - 3.3.1 Prevalence survey .................................................................................................................. - 17 - 3.3.2 Prospective study ................................................................................................................... - 17 - IV 3.3.3 Sample analysis ..................................................................................................................... - 19 - 3.3.3.1 Bovine viral diarrhoea virus (BVDV) ................................................................................ - 20 - 3.3.3.2 Brucella abortus ................................................................................................................. - 22 - 3.3.3.3 Neospora caninum .............................................................................................................. - 24 - 3.3.3.4 Sampling of dogs for Neospora caninum ........................................................................... - 25 - 3.4 Data management ............................................................................................................ - 25 - 3.4.1 Statistical analysis ................................................................................................................. - 26 - CHAPTER FOUR ......................................................................................................................... - 28 - 4 SEROPREVALENCE AND RISK FACTORS OF BOVINE VIRAL DIARRHOEA VIRUS, Brucella abortus AND Neospora caninum ANTIBODIES IN DAIRY CATTLE HERDS IN NAKURU DISTRICT, KENYA ................................................. - 28 - 4.1 Introduction ..................................................................................................................... - 28 - 4.1.1 Bovine Viral Diarrhoea ......................................................................................................... - 29 - 4.1.2 Brucellosis ......................................................................................................................... - 31 - 4.1.3 Neosporosis ......................................................................................................................... - 32 - 4.2 Materials and Methods .................................................................................................... - 34 - 4.2.1 Study area ......................................................................................................................... - 34 - 4.2.2 Selection of study farms and animals .................................................................................... - 34 - 4.2.3 Data and sample collection. ................................................................................................... - 34 - 4.3 Sample handling and laboratory analysis ........................................................................ - 34 - 4.4 Data management and analysis ....................................................................................... - 35 - 4.4.1 Data management .................................................................................................................. - 35 - 4.4.2 Statistical analysis ................................................................................................................. - 35 - 4.5 Results ......................................................................................................................... - 35 - 4.5.1 Descriptive statistics .............................................................................................................. - 35 - 4.5.1.1 Response rate and number of animals selected into the study............................................ - 35 - 4.5.1.2 Animal variables ................................................................................................................. - 36 - 4.5.1.3 Feeding system ................................................................................................................... - 36 - V 4.5.1.4 Breeding methods ............................................................................................................... - 36 - 4.5.1.5 Vaccination ......................................................................................................................... - 37 - 4.5.1.6 Reproductive history .......................................................................................................... - 37 - 4.5.1.7 Seroprevalence results ........................................................................................................ - 37 - 4.5.2 Disease variables ................................................................................................................... - 37 - 4.5.2.1 BVDV ......................................................................................................................... - 37 - 4.5.2.2 Neospora caninum .............................................................................................................. - 38 - 4.5.2.3 Brucella abortus ................................................................................................................. - 39 - 4.5.2.4 Interrelationship between diseases ..................................................................................... - 41 - 4.5.2.5 Regression analysis of risk factors ..................................................................................... - 41 - 4.6 Discussion ....................................................................................................................... - 43 - 4.7 Conclusion and recommendations .................................................................................. - 48 - CHAPTER FIVE ......................................................................................................................... - 49 - 5 SEROEPIDEMIOLOGICAL SURVEY OF Neospora caninum AND ITS RISK FACTORS IN FARM DOGS IN NAKURU DISTRICT, KENYA ............................... - 49 - 5.1 Introduction ..................................................................................................................... - 49 - 5.2 Materials and methods .................................................................................................... - 51 - 5.2.1 Study area ......................................................................................................................... - 51 - 5.2.2 Farm and animal selection ..................................................................................................... - 51 - 5.2.3 Sample collection, handling, and laboratory analysis ........................................................... - 51 - 5.3 Data collection, management and analysis ..................................................................... - 52 - 5.3.1 Analytical statistics ................................................................................................................ - 53 - 5.4 Results ......................................................................................................................... - 53 - 5.4.1 Descriptive statistics .............................................................................................................. - 53 - 5.4.2 Chi-squared analyses of risk factors ...................................................................................... - 54 - 5.4.3 Regression analysis of risk factors ........................................................................................ - 56 - 5.5 Discussion ....................................................................................................................... - 56 - VI CHAPTER SIX ......................................................................................................................... - 60 - 6 THE EFFECT OF BOVINE VIRAL DIARRHOEA VIRUS, Brucella abortus AND Neospora caninum ON THE INCIDENCE OF ABORTION/FOETAL LOSS IN DAIRYCATTLE HERDS IN NAKURU DISTRICT, KENYA .................................... - 60 - 6.1 Introduction ..................................................................................................................... - 60 - 6.2 Materials and methods .................................................................................................... - 64 - 6.2.1 Selection of study farms and animals .................................................................................... - 64 - 6.2.2 Sample handling and laboratory analysis .............................................................................. - 64 - 6.3 Statistical analysis ........................................................................................................... - 65 - 6.3.1 Descriptive statistics .............................................................................................................. - 65 - 6.3.2 Analytical statistics ................................................................................................................ - 66 - 6.4 Results ......................................................................................................................... - 67 - 6.4.1 Descriptive statistics .............................................................................................................. - 67 - 6.4.1.1 Animals selected and monitored in the study ..................................................................... - 67 - 6.4.1.2 Animal variables ................................................................................................................. - 67 - 6.4.1.3 Location ......................................................................................................................... - 67 - 6.4.1.4 Feeding system ................................................................................................................... - 67 - 6.4.1.5 Breeding methods ............................................................................................................... - 68 - 6.4.1.6 Reproductive history .......................................................................................................... - 68 - 6.4.2 Abortion incidence ................................................................................................................ - 68 - 6.4.2.1 Univariable associations with abortion............................................................................... - 69 - 6.4.2.2 Stage of foetal loss.............................................................................................................. - 72 - 6.4.2.3 Incidence rates of NC, BVD and BA ................................................................................. - 73 - 6.4.2.4 Infections vs foetal loss ...................................................................................................... - 73 - 6.4.3 Regression analysis ............................................................................................................... - 74 - 6.5 Discussion ....................................................................................................................... - 75 - CHAPTER SEVEN ........................................................................................................................ - 78 - VII 7 AN ASSESSMENT OF THE KNOWLEDGE, ATTITUDES AND PRACTICES RELATED TO BOVINE ABORTION AND FOETAL LOSS AMONG ANIMAL HEALTH SERVICE PROVIDERS IN NAKURU DISTRICT, KENYA ...................... - 78 - 7.1 Introduction ..................................................................................................................... - 78 - 7.2 Materials and methods .................................................................................................... - 80 - 7.2.1 Study area and population ..................................................................................................... - 80 - 7.2.2 Data collection ....................................................................................................................... - 80 - 7.2.3 Data management and analysis ............................................................................................. - 81 - 7.2.3.1 Data management ............................................................................................................... - 81 - 7.2.3.2 Descriptive statistics ........................................................................................................... - 81 - 7.2.3.3 Analytical statistics ............................................................................................................. - 81 - 7.3 Results ......................................................................................................................... - 82 - 7.3.1 Descriptive statistics .............................................................................................................. - 82 - 7.3.2 Comparison of the level of training with knowledge and practices on bovine abortion ....... - 83 - 7.3.3 Comparison of the years of experience against perceptions and management of bovine abortion ......................................................................................................................... - 87 - 7.4 Discussion ....................................................................................................................... - 90 - CHAPTER EIGHT ......................................................................................................................... - 95 - 8 CONCLUSIONS AND RECOMMENDATIONS ......................................................... - 95 - REFERENCES ......................................................................................................................... - 97 - APPENDICES - 118 - APPENDIX 1 FARMERS’ SURVEY QUESTIONNAIRE ........................................................ - 118 - APPENDIX 2 VETERINARIANS AND PARAVETERINARIANS SURVEY QUESTIONNAIRE ...................................................................................................... - 120 - APPENDIX 3 INDIVIDUAL ANIMAL FOLLOW-UP RECORD ............................................ - 121 - VIII LIST OF TABLES Table 4.1 Descriptive statistics and univariable associations between seropositivity to BVDV, NC and BA their risk factors in among dairy cattle in Nakuru District, Kenya, 2010……………………………………………...………………...- 41 - Table 5.1 Descriptive statistics and univariable association between seropositivity for Neospora caninum and epidemiological data for 84 dogs on 53 dairy farms in Nakuru District, Kenya in 2010 ..................................................................... - 55 - Table 6.1 Distribution of foetal loss (n=31) by parity in dairy cattle farms in Nakuru District, Kenya in 2010-2011 ......................................................................... - 70 - Table 6.2 Stage of gestation of foetal loss (n=31) in 260 dairy cattle in Nakuru District, Kenya in 2010-2011 ....................................................................................... - 72 - Table 6.3 Kaplan-Meier output on stage/time of foetal loss (n=31) in 260 dairy cattle herds in Nakuru District, Kenya ..................................................................... - 72 - Table 6.4 Distribution of infections associated with foetal loss (n=31) in 260 dairy cattle in Nakuru District, Kenya, 2010-2011 ........................................................... - 74 - Table 6.5 Multivariable regression analysis of risk factors for foetal loss (n=31) in 260 dairy cattle in Nakuru District, Kenya............................................................ - 74 - Table 5.1 Descriptive statistics and univariable association between seropositivity for Neospora caninum and epidemiological data for 84 dogs on 53 dairy farms in Nakuru District, Kenya in 2010……………………………………………- 56 - IX Table 6.1 Distribution of foetal loss (n=31) by parity in dairy cattle farms in Nakuru District, Kenya in 2010-2011…… ................................................................ .- 71 - Table 6.2 Stage of gestation of foetal loss (n=31) in 260 dairy cattle in Nakuru District, Kenya in 2010-2011………………………………………………………- 73 - Table 6.3 Kaplan-Meier output on stage/time of foetal loss (n=31) in 260 dairy cattle herds in Nakuru District, Kenya…………………………………………- 73 - Table 6.4 Distribution of infections associated with foetal loss (n=31) in 260 dairy cattle in Nakuru District, Kenya, 2010-2011……………………………..………- 75 - Table 6.5 Multivariable regression analysis of risk factors for foetal loss (n=31) in 260 dairy cattle in Nakuru District, Kenya…………………………………….- 75 - Table 7.1 Distribution of knowledge, attitudes and practices on bovine abortion by level of training among animal health service providers in Nakuru District, 2010- 86- Table 7.2 Distribution of knowledge, attitudes and practices on bovine abortion by years of practicing experience among animal health service providers in Nakuru District, 2010…………………..…………………………………………..- 89 - X
Description: