Genetic and Evolutionary Computation Wolfgang Banzhaf · Betty H.C. Cheng  Kalyanmoy Deb · Kay E. Holekamp  Richard E. Lenski · Charles Ofria  Robert T. Pennock · William F. Punch  Danielle J. Whittaker  Editors Evolution in Action: Past, Present and Future A Festschrift in Honor of Erik D. Goodman Genetic and Evolutionary Computation SeriesEditors: WolfgangBanzhaf,MichiganStateUniversity,EastLansing,MI,USA KalyanmoyDeb,MichiganStateUniversity,EastLansing,MI,USA Moreinformationaboutthisseriesathttp://www.springer.com/series/7373 Wolfgang Banzhaf • Betty H.C. Cheng Kalyanmoy Deb • Kay E. Holekamp Richard E. Lenski • Charles Ofria Robert T. Pennock • William F. Punch Danielle J. Whittaker Editors Evolution in Action: Past, Present and Future A Festschrift in Honor of Erik D. Goodman 123 Editors Wolfgang Banzhaf Betty H.C. Cheng Michigan State University Michigan State University East Lansing, MI, USA East Lansing, MI, USA Kalyanmoy Deb Kay E. Holekamp Michigan State University Michigan State University East Lansing, MI, USA East Lansing, MI, USA Richard E. Lenski Charles Ofria Michigan State University Michigan State University East Lansing, MI, USA East Lansing, MI, USA Robert T. Pennock William F. Punch Michigan State University Michigan State University East Lansing, MI, USA East Lansing, MI, USA Danielle J. Whittaker Michigan State University East Lansing, MI, USA ISSN 1932-0167 ISSN 1932-0175 (electronic) Genetic and Evolutionary Computation ISBN 978-3-030-39830-9 ISBN 978-3-030-39831-6 (eBook) https://doi.org/10.1007/978-3-030-39831-6 © Springer Nature Switzerland AG 2020 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. This Springer imprint is published by the registered company Springer Nature Switzerland AG The registered company address is: Gewerbestrasse 11, 6330 Cham, Switzerland Dr.ErikD.Goodman,2016 Preface The BEACON Congress in August 2018 provided an opportunity to celebrate its founding director Professor Erik Goodman’s remarkable achievements on the oc- casion of his 75th birthday. A number of the presentations at that 2018 BEACON Congress were specifically dedicated to him. This volume Evolution in Action — Past,Present,andFuturecombinessomeofthesewithadditionallysolicitedcontri- butionsfromcolleaguesandmembersofBEACONwhocouldnotattendthe2018 Congress. Thecontributionspublishedhererangefromrefreshinglypersonalstoriesofen- counterswithDr.Goodman,thehistoryandachievementsoftheBEACONCenter for the Study of Evolution in Action under his leadership, to research topics pre- sentedalongthelinesoftheresearchthrustgroupsintheBEACONCenter.These topicsdominatePartsItoVofthebook.AnimportantfocusofBEACONhasal- ways been education about evolution, and this is reflected in the contributions in PartVI.Atourrequest,Dr.Goodmangraciouslyprovideduswithanaccountofhis ownlifestory,whichformsthelastpartofthisvolume. Allchapterspublishedinthisvolumehaveundergoneeditorialreview.Addition- ally,somechapters(10,11,17,18,20,21,23)haveundergoneadditionalexternal anonymouspeerreviewattherequestoftheirauthors. Wewouldliketothankallcontributorsandreviewersfortheirdiligentworkin bringingtogetherthisexcitingvolume.Wewouldalsoliketothankthosewhohave helped the editors, from organizing our group meetings to bringing contributions together in a manageable LaTeX document. In particular, we thank Honglin Bao, ConnieJames,StephenKelly,IliyaMiralavy,IanWhalen,andYuanYuanfortheir invaluablehelp. EastLansing,Michigan WolfgangBanzhaf February12,2019 BettyH.C.Cheng KalyanmoyDeb KayE.Holekamp RichardE.Lenski CharlesOfria RobertT.Pennock BillF.Punch DanielleJ.Whittaker vii List of Contributors ChristophAdami1 DepartmentofMicrobiology&MolecularGenetics,MichiganStateUniversity, EastLansing,MI,USA HawladerA.AlMamun CSIROData61,CommonwealthScientificandIndustrialResearchOrganisation, Canberra,ACT,AUSTRALIA MarilynJ.Amey CollegeofEducation,MichiganStateUniversity,EastLansing,MI,USA WolfgangBanzhaf1 DepartmentofComputerScience&Engineering,MichiganStateUniversity,East Lansing,MI,USA JeffreyE.Barrick1 DepartmentofMolecularBiosciences,TheUniversityofTexasatAustin,Austin, TX,USA EricBerling1 CenterforInterdisciplinarity,MichiganStateUniversity,EastLansing,MIUSA ZacharyD.Blount1 DepartmentofMicrobiology&MolecularGenetics,MichiganStateUniversity, EastLansing,MI,USA;andDepartmentofBiology,Gambier,OH,USA SadaBoyd1 Energy and Environment Program, North Carolina A&T State University, Greensboro,NC,USA AlitaBurmeister1 DepartmentofEcology&EvolutionaryBiology,YaleUniversity,NewHaven,CT, USA ix x ListofContributors JudiBrownClarke1 BEACONCenterforEvolutioninAction,MichiganStateUniversity,EastLansing, MI,USA DanielE.Deatherage1 DepartmentofMolecularBiosciences,TheUniversityofTexasatAustin,Austin, TX,USA KalyanmoyDeb1 DepartmentofElectrical&ComputerEngineering,MichiganStateUniversity,East Lansing,MI,USA MeghanA.Duffy2 Department of Ecology & Evolutionary Biology, University of Michigan, Ann Arbor,MI,USA SubhrajitDutta DepartmentofCivilEngineering,NationalInstituteofTechnologySilchar,Cachar, Assam,INDIA IanDworkin1 Department of Biology, McMaster University, 1280 Main St. West, Hamilton, Ontario,CANADA RasheenaEdmundson1 DepartmentofBiology,BennettCollege,Greensboro,NC,USA AkamuJ.Ewunkem1 DepartmentofNanoengineering,JointSchoolofNanoscience&Nanoengineering, NorthCarolinaA&TStateUniversity&UNCGreensboro,Greensboro,NC,USA ZhunFan1 ShantouUniversity,Shantou,Guangdong,CHINA PatriciaL.Farrell-Cole1 VanAndelInstitute,GrandRapids,MI,USA FranciscoFerna´ndezdeVega UniversityofExtremadura,Me´rida,SPAIN EllenF.Foxman DepartmentofLaboratoryMedicine;andDepartmentofImmunology,YaleSchool ofMedicine,NewHaven,CT,USA AmirH.Gandomi1 FacultyofEngineeringandInformationTechnology,UniversityofTechnology, Sydney,NSW,AUSTRALIA EbenGering1 DepartmentofIntegrativeBiology;andEcology,EvolutionaryBiology,&Behavior Program,MichiganStateUniversity,EastLansing,MI,USA ListofContributors xi ThomasGetty1 DepartmentofIntegrativeBiology;andEcology,EvolutionaryBiology,&Behavior Program,MichiganStateUniversity,EastLansing,MI,USA HeatherGoldsby1 DepartmentofComputerScience&Engineering,MichiganStateUniversity,East Lansing,MI,USA CedricGondro1 DepartmentofAnimalScience,MichiganStateUniversity,EastLansing,MI,USA JosephL.GravesJr1 DepartmentofNanoengineering,JointSchoolofNanoscience&Nanoengineering, NorthCarolinaA&TStateUniversity&UNCGreensboro,Greensboro,NC,USA JianHan1 DepartmentofBiology,NorthCarolinaA&TStateUniversity,Greensboro,NC, USA ScottH.Harrison1 DepartmentofBiology,NorthCarolinaA&TStateUniversity,Greensboro,NC, USA FarazHasan DepartmentofComputerApplications,B.S.AbdurRahmanCrescentInstituteof Science&Technology,Chennai,TamilNadu,INDIA ErikHemberg Computer Science & Artificial Intelligence Lab, Massachusetts Institute of Technology,Cambridge,MA,USA ArendHintze1 DepartmentofComputerScience&Engineering;andDepartmentofIntegrative Biology,MichiganStateUniversity,EastLansing,MI,USA KayHolekamp1 DepartmentofIntegrativeBiology,andEcology,EvolutionaryBiology,&Behavior Program,MichiganStateUniversity,EastLansing,MI,USA GiselaHussey CollegeofVeterinaryMedicine,MichiganStateUniversity,EastLansing,MI,USA AkikoIwasaki Department of Immunology, Yale School of Medicine; and Department of Molecular,Cellular&DevelopmentalBiology,YaleUniversity,NewHaven,CT, USA;andHowardHughesMedicalInstitute,ChevyChase,MD,USA JuliusH.Jackson1 DepartmentofMicrobiology&MolecularGenetics,MichiganStateUniversity, EastLansing,MIUSA