SUBJECT INDEX A management and, 95, Alfalfa mosaic virus Abies spp. 99-100 plant viruses and, 131 Phellinus weirii and forest Africa Allomyces spp. structure, 518-19, 529, rust fungi and, 51 horizontal gene transfer in 531-32 Aggregate risk fungal evolution and, 334 Abiotic factors Food Quality Protection Alternaria spp. advances in plant health Act and, 577, 581-83 ecology and biogeography management and, 95-113 Agricultural base of microorganisms on citrus blight and, 186 declining plant surfaces, 155, 159 Absolute yield a century of progress in host-parasite interactions advances in plant health plant pathology and, and, 38 management and, 95, 99 1-16 Amino acids Acetobacterium spp. Agriculture citrus blight and, 190 ecology and biogeography dispersal and spatial closteroviruses and, 299, of microorganisms on analysis of 305, 307-8 plant surfaces, 156 Phytophthora-caused ecology and biogeography Active oxygen epidemics, 568-69 of microorganisms on photoactivated Cercospora Food Quality Protection plant surfaces, 150 toxin cercosporin and, Act and, 577-94 horizontal gene transfer in 461-83 Agrobacterium tumefaciens fungal evolution and, 327, Actual yield advances in plant health 334, 336-37 advances in plant health management and, 112 host-parasite interactions management and, 99-102 a century of progress in and, 39 Aeciospores plant pathology and, 4 plant viruses and, 123 rust fungi and, 58-59 host-parasite interactions Amplicons Aerobiology and, 35 molecular diagnostic advances in plant health plant viruses and, 129, technologies and, 217-18 management and, 95, 137 Anaerobic fungi 107-9 Agrochemical industry horizontal gene transfer in dispersal and spatial Food Quality Protection fungal evolution and, analysis of Act and, 589-90 341-43 Phytophthora-caused Agrocybe aegerita Anastomoses epidemics, 541, 551-53 horizontal gene transfer in mitochondrial DNA in epidemiology as a science fungal evolution and, 334 fungal senescence and of patterns and, 71, 76 Agroinfection hypovirulence, 397-416 wheat leaf/stem rust plant viruses and, 129 Androgens epidemiology in central Alberta Food Quality Protection Great Plains of USA, 491, Phellinus weirii and forest Act and, 583 503-4 structure, 520 Angola Affordable yield Aleyrodidae rust fungi and, 51 advances in plant health closteroviruses and, 298 Animal-parasite interactions Sor SUBJECT INDEX of microorganisms on pathogenicity gene mitochondrial DNA in plant surfaces, 154, 159 control, 263-84 fungal senescence and Bacillus thuringiensis Bakanae disease hypovirulence, 397, advances in plant health a century of progress in 415-16 management and, 107, plant pathology and, 9 Biosynthesis 109 Barberry eradication photoactivated Cercospora ecology and biogeography epidemiology as a science toxin cercosporin and, of microorganisms on of patterns and, 83-84 461-83 plant surfaces, 159 Basidiospores Biotechnology Food Quality Protection rust fungi and, 49, 58 a century of progress in Act and, 590 BB statistics plant pathology and, 1-16 Bacteria dispersal and spatial host-parasite interactions biological control of analysis of and, 40-41 nematodes and, 423-37 Phytophthora-caused Biotic factors cell biology imaging of epidemics, 554-56 advances in plant health plant-microbe interactions Bemicia spp management and, 95-113 and, 443-45 closteroviruses and, 298, citrus blight and, 186 a century of progress in 302 BLASTN program plant pathology and, 2-4, Benchmark yield horizontal gene transfer in 8 for crops fungal evolution and, citrus blight and, 188, advances in plant health 335 194-95 management and, BLASTP program ecology and biogeography 98-101 horizontal gene transfer in of microorganisms on Bewildering epidemics fungal evolution and, 341 plant surfaces, 145, 158, epidemiology as a science Blight-associated proteins 161 of patterns and, 79-80 citrus blight and, 185-87, Food Quality Protection Binary data 190 Act and, 590 dispersal and spatial “Boom and bust” cycle host-parasite interactions analysis of wheat leaf/stem rust and, 35-39, 42 Phytophthora-caused epidemiology in central lipopolysaccharides and, epidemics, 541, 554-56 Great Plains of USA, 491 241-56 Biochemistry Bootstrapping molecular diagnostic a century of progress in closteroviruses and, 305 technologies and, 207-29 plant pathology and, 6—7 Botrytis spp. nematode parasitism genes Biochips host-parasite interactions and, 365-88 molecular diagnostic and, 33 plant viruses and, 129 technologies and, 227-28 Boundary layers Ralstonia solanacearum Biofilms epidemiology as a science virulence and ecology and biogeography of patterns and, 78 pathogenicity gene of microorganisms on Brassica campestris control, 263-84 plant surfaces, 163-65 bacterial Bacterial leaf spot Biogeography lipopolysaccharides and, host-parasite interactions microorganismal, 145-71 243 and, 42 Biological control Brazil Bacterial wilt disease advances in plant health citrus blight and, 181, Ralstonia solanacearum management and, 95, 184-86, 189, 191-92 virulence and 109-11 rust fungi and, 51 598 SUBJECT INDEX nematode parasitism genes host-parasite interactions fungal senescence and and, 365-88 and, 32, 36-39, 42-43 hypovirulence, 397-416 Anoxic sediment Arbutus menziesii Aureobasidium spp. ecology and biogeography Phellinus weirii and forest ecology and biogeography of microorganisms on structure, 518 of microorganisms on plant surfaces, 145-71 Arceuthobium spp. plant surfaces, 159 Antagonism Phellinus weirii and forest Australia microbes for nematode structure, 530 advances in plant health control, 431-33 Archaea management and, Antioxidants ecology and biogeography 109-10 photoactivated Cercospora of microorganisms on plant viruses and, 121 toxin cercosporin and, plant surfaces, 145, 157 rust fungi and, 59 476-81 Argentina Autocorrelation Antomicrobial compounds citrus blight and, 181, 189, spatial bacterial 192 dispersal and spatial lipopolysaccharides and, Armillaria ostoyae analysis of 241-56 Phellinus weirii and forest Phytophthora-caused Aphanomyces etuiches structure, 531 epidemics, 554-56, advances in plant health Ascobolus immersus 558-60 management and, 108 horizontal gene transfer in Average yield Aphids fungal evolution and, advances in plant health closteroviruses and, 329-30, 340 management and, 95, 101 293-94, 301-2, 315 Asexual transmission Avirulence Aphis fabae mitochondrial DNA in bacterial closteroviruses and, 298 fungal senescence and lipopolysaccharides and, Aplodontia rufa hypovirulence, 397-416 241-46 Phellinus weirii and forest Asia Avocado sunblotch viroid structure, 525 Phellinus weirii and forest plant viruses and, 128 Apple chlorotic leafspot structure, 521 avr genes molecular diagnostic Aspergillus spp. bacterial technologies and, 212 advances in plant health lipopolysaccharides and, Apple scab management and, 110 253-55 epidemiology as a science horizontal gene transfer in a century of progress in of patterns and, 82 fungal evolution and, plant pathology and, 7-9 Apple stem pitting virus 331-34, 337, 343 host-parasite interactions molecular diagnostic mitochondrial DNA in and, 36-37 technologies and, 212 fungal senescence and rust fungi and, 57, 59 Appressoria hypovirulence, 406 Axenic culture rust fungi and, 49-62 Atkinsonella hypoxylon rust fungi and, 59 Arabidopsis thaliana horizontal gene transfer in Azospirillum lipoferum bacterial fungal evolution and, ecology and biogeography lipopolysaccharides and, 331 of microorganisms on 243, 247-49, 256 Attainable yield plant surfaces, 154 citrus blight and, 190 advances in plant health horizontal gene transfer in management and, 95, 99 B fungal evolution and, Attenuating viruses Bacillus subtilis 331 mitochondrial DNA in ecology and biogeography SUBJECT INDEX 601 Central America fungal senescence and lettuce big vein, 193-95 epidemiology as a science hypovirulence, 397-416 looking for cause, 188-89 of patterns and, 84 Children movement, 187-88 rust fungi and, 50 Food Quality Protection overview, 183-84 Cercospora toxin cercosporin Act and, 577-94 peach tree short life, photoactivated Chimeric genomes 195-96 antioxidant defense, closteroviruses and, replant diseases and, 476-81 310-11 196-97 conclusions, 483 China Rio Grand gummosis, introduction, 461-63 advances in plant health 197-98 photosensitizer management and, 103 rootstocks and, 189-90 resistance, 463-65, epidemiology as a science Citrus spp. 469-74 of patterns and, 88 citrus blight and, 181-99 plant pathogenesis, Chlamydomonas spp. Cladosporium spp. 465-69 horizontal gene transfer in bacterial pyridoxine, 476-81 fungal evolution and, lipopolysaccharides and, regulation of production, 343 254 481-83 Chloramphenicol ecology and biogeography resistance genes, 474-76 citrus blight and, 197 of microorganisms on Ceylon Chlorosis plant surfaces, 155, 159 epidemiology as a science citrus blight and, 181, Clean planting material of patterns and, 75, 88 190-91 advances in plant health rust fungi and, 51 Chlorothalonil management and, 102-3 Chaetomium spp. Food Quality Protection Clean tillage ecology and biogeography Act and, 587 advances in plant health of microorganisms on Chromosomes management and, 95, 104 plant surfaces, 155 horizontal gene transfer in Clearcutting Character-state discordance fungal evolution and, 325, Phellinus weirii and forest horizontal gene transfer in 351-52 structure, 532 fungal evolution and, Citrus. blight Cleavage 327 abiotic factors, 186 DNA Chemotaxis associated proteins, 190 cell biology imaging of molecular diagnostic biotic factors, 186 plant-microbe technologies and, 215 citrus blight, 184 interactions and, 443, Chemotherapy citrus psorosis, 191-93 452 Viral citrus variegated chlorosis, Cloning plant viruses and, 123 190-91 host-parasite interactions Chenopodium spp. conclusions, 198-99 and, 31-4" citrus blight and, 192, 194 diagnostic tests, 185-86 nematode parasitism genes plant viruses and, 120 diseases of complex and, 365-88 Cherry mottle leaf virus etiology, 195-98 plant viruses and, 129 molecular diagnostic dry root rot—sudden death, Closteroviruses technologies and, 223 198 aphid-transmitted Chestnut blight experimental transmission, closteroviruses, 301-2 epidemiology as a science 186-87 biology, 294-99, 311-12 of patterns and, 75 history, 184-85 chimeric genomes, 310-11 mitochondrial DNA in introduction, 182-83 conclusions, 314-15 600 SUBJECT INDEX Britain epidemiology in central Cauliflower mosaic virus epidemiclogy as a science Great Plains of USA, 491, plant viruses and, 124 of patterns and, 87-88 493-94 Caulimoviridae British Columbia Candida norvegesis plant viruses and, 125 Phellinus weirii and forest horizontal gene transfer in Cell biology imaging structure, 517, 519-20, fungal evolution and, 343 of plant-microbe 522 Canker interactions Brome mosaic virus citrus blight and, 195 conclusions, 453-55 plant viruses and, 127 Canopy dispersal confocal laser scanning Bromus spp. wheat leaf/stem rust microscopy, 446, 448 host-parasite interactions epidemiology in central cytoskeleton and, 33 Great Plains of USA, rearrangements, 451-52 BW statistics 501-3 cytosolic calcium levels, dispersal and spatial Canopy gaps 450-S1 analysis of Phellinus weirii and forest DNA cleavage, 452 Phytophthora-caused structure, 515, 517, 522, fluorescent probes, epidemics, 554-56 524-26 449-51 Capsicum annum green fluorescent C bacterial protein, 449-50, 452-53 Ca*+ lipopolysaccharides and, imaging techniques, cell biology imaging of 243 446-S0 plant-microbe interactions Capsid proteins integration of imaging and, 443-55 citrus blight and, 193 techniques, 453 Caenorhabditis elegans Captan introduction, 444-46 nematode parasitism genes Food Quality Protection laser processing, 448 and, 365-88 Act and, 587 reactive oxygen species, California Carbamates 451 advances in plant health Food Quality Protection selected examples, management and, 107 Act and, 587 50-52 citrus blight and, 184-85 Carcinogens video microscopy, closteroviruses and, 310 Food Quality Protection 446-47 epidemiology as a science Act and, 581, 589 visualizing and tracking of patterns and, 76 Caribbean Basin gene products, 449-50 Food Quality Protection citrus blight and, 197 Cell surface structure Act and, 585 Carlaviridae bacterial Phellinus weirii and forest plant viruses and, 125 lipopolysaccharides and, structure, 519-20, 531 Cascade Mountains 241-56 Canada Phellinus weirii and forest Cellulolytic enzymes epidemiology as a science structure, 517-20, Ralstonia solanacearum of patterns and, 88 522-29, 531, 533-36 virulence and molecular diagnostic Catalases pathogenicity gene technologies and, 213 horizontal gene transfer in control, 269 Phellinus weirii and forest fungal evolution and, 343 Cell wall-degrading enzymes structure, 517, 519-20, Catastrophic tissue damage Ralstonia solanacearum 522 bacterial virulence and rust fungi and, 50 lipopolysaccharides and, pathogenicity gene wheat leaf/stem rust 241-48, 252-56 control, 263-84 SUBJECT INDEX 603 lipopolysaccharides and, molecular diagnostic Defective interfering viruses 250-51 technologies and, 220 plant viruses and, 126 Cowpea mosaic virus Cymbidium mosaic virus Defective RNAs plant viruses and, 122 molecular diagnostic closteroviruses and, Crataegus spp. technologies and, 223 309-10 rust fungi and, 59 Cysteine Defense-related responses Criconemella xenoplax citrus blight and, 190 bacterial citrus blight and, 196 Cysts lipopolysaccharides and, Crops microbes for nematode 241, 246-53 advances in plant health control, 423-37 Degeneration management and, 95, nematode parasitism genes grapevine 98-102 and, 365-88 molecular diagnostic closteroviruses and, Cytomegalovirus technologies and, 210 293-315 plant viruses and, 130 Delaney Clause Food Quality Protection Cytopathology Food Quality Protection Act and, 577, 583-89 closteroviruses and, Act and, 580-81 rust fungi and, 49-62 298-99 Demographic processes Crosses Cytoplasm ecology and biogeography mitochondrial DNA in mitochondrial DNA in of microorganisms on fungal senescence and fungal senescence and plant surfaces, 165-66 hypovirulence, 397-416 hypovirulence, 397-416 Dendroctonus pseudotsugae Cross protection Cytoskeleton Phellinus weirii and forest plant viruses and, 120 cell biology imaging of structure, 524 Cryphonectria parasitica plant-microbe interactions Dendrophoma spp. horizontal gene transfer in and, 443, 451-52 ecology and biogeography fungal evolution and, Cytosol of microorganisms on 331-32 cell biology imaging of plant surfaces, 159 mitochondrial DNA in plant-microbe interactions Deposition fungal senescence and and, 443, 450-51 epidemiology as a science hypovirulence, 397-416 Cytospora spp. of patterns and, 78-79 Cryptococcus spp. citrus blight and, 195 Desulfobulbus spp. ecology and biogeography ecology and biogeography ecology and biogeography of microorganisms on of microorganisms on of microorganisms on plant surfaces, 155, 159 plant surfaces, 159 plant surfaces, 156-57 Cucumber mosaic virus Desulfovibrio spp. plant viruses and, 126 D ecology and biogeography Cumulative risk Dayapyrum villosum of microorganisms on Food Quality Protection advances in plant health plant surfaces, 156-57 Act and, 577, 581-83 management and, 108 Detection Cyanobacteria Decision-support systems pathogen ecology and biogeography advances in plant health plant viruses and, of microorganisms on management and, 95-97, 117-38 plant surfaces, 112-13 “Detectives” 154, 158 Decline disease Cylindrocarpon spp. grapevine epidemiology as a citrus blight and, 197 molecular diagnostic science of patterns and, Cylindrocladium spp. technologies and, 210 71-73 602 SUBJECT INDEX cytopathology, 298-99 Phellinus weirii and forest Complex multicomponent defective RNAs, 309-10 structure, 517, 520 control epidemiology, 300-4 Coat proteins Ralstonia solanacearum evolution, 304-9, 311-12 citrus blight and, 193 virulence and genetic diversity, 300-4, TMV pathogenicity gene 309-13 plant viruses and, control, 277-78 helicases, 305-6 122-23 Computer modeling HSP70 gene, 306-7 Cochliobolus carbonum epidemiology as a science introduction, 294 a century of progress in of patterns and, 82 mealybug-transmitted plant pathology and, 9 Confocal laser scanning closteroviruses, 304 host-parasite interactions microscopy molecular biology, and, 36, 38 cell biology imaging of 299-300 Coevolution plant-microbe interactions molecular diagnostic closteroviruses and, and, 446, 448 technologies, 211, 224 293-15 Conifer forests morphology, 294-99 Coffee rust Phellinus weirii and forest overview, 294-99 epidemiology as a science structure, 515-36 phylogeny, 304-9 of patterns and, 75, 88 Connecticut practical implications, rust fungi and, 49, 51 epidemiology as a science 312-13 Colletotrichum of patterns and, 76, 84-85 range of viruses, 294-98 gloeosporiodes Conserved sequences RdRp motifs, 306 horizontal gene transfer in molecular diagnostic recombination, 309-11 fungal evolution and, 340 technologies and, 207-29 taxonomy, 313-14 Colletrichum acutatum Consumer acceptance tissue tropism, 298-99 dispersal and spatial advances in plant health transmission, 298 analysis of management and, 107 unknown vectors, 300-1 Phytophthora-caused Consumer costs vectors, 308 epidemics, 563 Food Quality Protection whitefly-transmittea Colonization factors Act and, 577-94 closteroviruses, 302-4 Ralstonia solanacearum Contagious distribution Clostridium spp. virulence and epidemiology as a science ecology and biogeography pathogenicity gene of patterns and, 75 of microorganisms on control, 279-80 Continuous data plant surfaces, 157 Colorado dispersal and spatial CLUSTALX program epidemiology as a science analysis of closteroviruses and, 305, of patterns and, 83 Phytophthora-caused 307 Columbia River Basin epidemics, 541-70 Clusters Phellinus weirii and forest Coprinus spp gene structure, 517, 534 citrus blight and, 198 dispersal and spatial Commensals horizontal gene transfer in analysis of ecology and biogeography fungal evolution and, 337 Phytophthora-caused of microorganisms on Copy DNA (cDNA) clones epidemis, 557 plant surfaces, 145-71 plant viruses and, 129 horizontal gene transfer Communications Cosuppression in fungal evolution and, a century of progress in plant viruses and, 133-34 345-51 plant pathology and, Coumaroyl-tyramine Coastal Ranges 1-16 bacterial SUBJECT INDEX 605 Phellinus weirii and forest rust fungi and, 49-62 take-off, 78 structure, 515, 532-33 wheat leaf/stem rust tons, 85-86 Electron microscopy epidemiology in central traps, 77-78 cell biology imaging of Great Plains of USA, 491 weather, 77 plant-microbe interactions Epidemiology wheat leaf/stem rust and, 443-55 closteroviruses and, 300-4 central Great Plains of Electrophoresis dispersal and spatial USA and, 491 molecular diagnostic analysis of Epiphytes technologies and, 217-18 Phytophthora-caused ecology and biogeography Eleusine spp. epidemics, 541, 567-68 of microorganisms on horizontal gene transfer in molecular diagnostic plant surfaces, 145-65 fungal evolution and, 338 technologies and, 207-29 epidemiology as a science Endocrine disruption rust fungi and, 49-62 of patterns and, 73 Food Quality Protection as a science of patterns eps promoter Act and, 577, 583, 589 aerobiology, 76 Ralstonia solanacearum Endophytes bewildering epidemics, virulence and ecology and biogeography 79-80 pathogenicity gene of microorganisms on computer models, 82 control, 276-78 plant surfaces, 145-71 crops, 84 Erwinia spp. Environmental factors deposition, 78-79 bacterial advances in plant health dilution, 78-79 lipopolysaccharides and, management and, 95-138 disease loss, 85-87 243, 254 wheat leaf/stem rust diversity, 83-85 host-parasite interactions epidemiology in central dollars, 86-87 and, 37 Great Plains of USA, 491 epidemics, 75-76, 79-82 molecular diagnostic Environmental heterogeneity fungicide, 84-85 technologies and, 226 dispersal and spatial future research, 89-90 Escape analysis of gradients, 77-78 wheat leaf/stem rust Phytophthora-caused introduction, 72-74 epidemiology in central epidemics, 541-70 logistic curve, 80, 82 Great Plains of USA, Enzyme-linked long-term bets, 88-89 509 immunosorbent assay managing disease, 87-89 Escherichia coli (ELISA) matching pathogen and bacterial molecular diagnostic host genes, 82-85 lipopolysaccharides and, technologies and, 207-29 measuring disease, 243, 246, 252, 254 Epicoccum spp. 74-75 horizontal gene transfer in ecology and biogeography new pathogens, 75 fungal evolution and, 328, of microorganisms on patterns, 72-73 335 plant surfaces, 159 plant epidemiology host-parasite interactions Epidemics compared to medical, 73 and, 36 citrus blight and, 181-99 quarantines, 75-76 plant viruses and, 129 dispersal and spatial short-term decisions, Esophageal gland cells analysis of 87-88 nematode parasitism genes Phytophthora spp. and, spreading within a and, 365-88 541-70 locality, 77-79 Estrogenic effects epidemiology as a science state of epidemiology in Food Quality Protection of patterns and, 71, 75-82 1900, 73-74 Act and, 583 604 SUBJECT INDEX Determinants Disease prediction Phellinus weirii and forest bacterial advances in plant health structure, 515-36 lipopolysaccharides and, management and, 95-97, Drosophila spp. 241-56 112-13 host-parasite interactions Difenconazole Dispersal and, 42 citrus blight and, 197 epidemiology as a science Dry root rot-sudden death Differential varieties of patterns and, 71-90 citrus blight and, 181, 198 epidemiology as a science Phytophthora-caused Dutch elm disease - of patterns and, 71-90 epidemics and, 541-70 epidemiology as a science Differentiation wheat leaf/stem rust of patterns and, 75-76 molecular diagnostic epidemiology in central technologies and, 217-18 Great Plains of USA, E Dilution 501-7 East Africa epidemiology as a science Distance indices rust fungi and, 51 of patterns and, 78-79 dispersal and spatial Ebola virus Direct molecular analysis analysis of epidemiology as a science nematode parasitism genes Phytophthora-caused of patterns and, 89 and, 370-76 epidemics, 557-58 Echinodontium tinctorum Disease control Disturbance agents Phellinus weirii and forest mitochondrial DNA in Phellinus weirii and forest structure, 529 fungal senescence and structure, 515-36 Ecology hypovirulence, 397-416 Diversity dispersal and spatial wheat leaf/stem rust closteroviruses and, analysis of epidemiology in central 300-13 Phytophthora-caused Great Plains of USA, 491 ecology and biogeography epidemics, 541-70 Disease cycles of microorganisms on microorganismal, 145-71 dispersal and spatial plant surfaces, 145-71 molecular diagnostic analysis of epidemiology as a science technologies and, 207-11, Phytophthora-caused of patterns and, 71, 83-85 214, 222, 225-26, 229 epidemics, 544 Phellinus weirii and forest Phellinus weirii and forest Disease diagnosis structure, 518, 524-25, structure, 515 molecular diagnostic 531-32 Economics technologies and, 207-29 DNA analysis advances in plant health Disease management epidemiology as a science management and, 95-138 dispersal and spatial of patterns and, 71-90 citrus blight and, 181-99 analysis of DNA cleavage epidemiology as a science Phytophthora-caused cell biology imaging of of patterns and, 86-87 epidemics, 541-70 plant-microbe interactions Food Quality Protection epidemiology as a science and, 443, 452 Act and, 577-94 of patterns and, 87-89 DNA probes molecular diagnostic Food Quality Protection molecular diagnostic technologies and, 223-24 Act and, 577-94 technologies and, 216 Ecophysiology molecular diagnostic Double-stranded RNA ecology and biogeography technologies and, 207-29 (dsRNA) of microorganisms on Disease measurement citrus blight and, 181, plant surfaces, 145, epidemiology as a science 193-94 150-51, 153 of patterns and, 74-75 Douglas fir Ecosystem management