CUMULATIVE INDEXES CONTRIBUTING AUTHORS, VOLUMES 54-58 A Clark-Curtiss JE, E Ah Tow L, 58:649-90 57:517-49 Earhart CA, 58:555-85 Ajello L, 56:315—44 Cogoni C, 55:381—406 Edberg SC, 55:201-34 Anderson JB, 56:139-65 Cohan FM, 56:457-87 Eitzen EM Jr, 55:235—53 Anderson JP, 58:183—205 Coppens I, 54:129-56 Engel JN, 55:407-35 Angulo A, 55:531-60 Cornelis GR, 54:735-74 Ernst PB, 54:615—40 Aravind L, 55:709-42 Cosma CL, 57:641-76 F Arst HN Jr, 58:425-51 Cossart P, 58:587-610 Atlas RM, 56:167-85 Costerton JW, 56:187—209 Fahey RC, 55:333-56 Ausmees N, 57:225-47 Cotter PA, 54:519-65 Falkovitz L, 58:143—59 Courtoy PJ, 54:129-S6 Fast NM, 56:93—116 B Cowan DA, 58:649-90 Feil EJ, 55:561—90 Balows A, 54:1—17 Cowen LE, 56:139-65 Fink DJ, 58:253-71 Bamford DH, 56:521—38 Cox MM, 57:551-77 Finking R, 58:453-88 Barletta RG, 58:329-63 Cronan JE, 55:305-—32; Fouet A, 55:647-71 Bashan A, 58:233-51 57:203-—24 Friedman DI, Bassler BL, 55:165-99 Currie CR, 55:357-80 57:101-23 Bayer EA, 58:521-54 Cypionka H, 54:827-48 Beckwith J, 55:21-48 G Belaich J-P, 58:521—54 D Gallegos M-T, 56:743-68 Bermudez LE, 58:329-63 Daboussi M-J, 57:275-—99 Brakhage AA, 56:433-—55 Daifuku R, 58:183—205 Gee JM, 57:57-76 Brinkman FSL, 56:17—38 Daugelavitius R, 56:521-—38 Ghazal P, 55:531-60 Brinton MA, 56:371—402 Davies DG, 56:187—209 Gibson J, 56:345-69 Brody S, 58:489-519 Davies JE, 57:1—27 Giovannoni SJ, Brown CK, 58:555-85 Davis RE, 54:221-55 57:369-94 Briissow H, 55:283-303 De Backer MD, 54:463-98 Glorioso JC, 58:253-71 Burrows SR, 54:19-48 Dehio C, 58:365-—90 Gober JW, 56:567-—97 de Konig-Ward TF, Godoy P, 56:743-68 Cc 54:157-85 Gogarten JP, 56:263-87 Campbell JW, 55:305—32 Delepelaire P, 58:611-47 Gold BD, 54:615—40 Caporale LH, 57:467-85 Demain AL, 58:1—42 Gordon GS, 54:68 1—708 Capy P, 57:275-99 DePriest PT, 58:273—301 Gottesman S, 58:303—28 Carmel-Harel O, 54:439-61 de Vos WM, 58:43-—73 Grabowski B, 57:487-516 Cawthon AG, 58:391-424 DiRita VJ, 54:519-65 Gross CA, 56:599-624; Chacon O, 58:329-63 Dover LG, 54:881-941 57:441-66 Chang Y, 57:609-39 Draper GC, 56:567—97 Gruber TM, 57:441-66 Chen M-H, 54:187-219 Duque E, 56:743-68 Gundersen-Rindal DE, Citovsky V, 54:187-219 Dussurget O, 58:587-610 54:221-55 736 CONTRIBUTING AUTHORS H Kolter R, 54:49-79 Newbold C, 55:673—707 Hacker J, 54:641—79 Koonin EV, 55:709—-42 Ng W-L, 57:57-76 Hammer BK, 54:567-613 Kowalchuk GA, 55:485—529 Nystrém T, 58:161-81 Hancock REW, 56:17-—38 Kulaev IS, 54:709-34 Handrick R, 56:403-—32 Kulakovskaya T, 54:709-34 O Haque R, 56:39-64 Kunik T, 54:187-—219 Ohlendorf DH, 58:555-—85 Harshey RM, 57:249-73 Kyes S, 55:673-—707 Olendzenski L, 56:263—87 Harwood CS, 56:345-69 O’Toole G, 54:49-79 Hawley RJ, 55:235-53 L Haydel SE, 57:517-49 Lakin-Thomas PL, P Henderson B, 57:29-55 58:489-519 Parsek MR, 57:677-701 Hilario E, 56:263—87 Lamed R, 58:521-—54 Pefialva MA, 58:425-51 Hillen W, 54:849-80 Langfelder K, 56:433-55 Petri WA Jr, 56:39-64 Hogle JM, 56:677—702 LaRossa RA, 56:599-624 Pizarro-Cerda J, 58:587-610 Horrocks P, 55:673—707 Law M, 57:323-42 Pla J, 54:463-98 Howe RA, 56:657-75 Lawrence JG, 57:419—-40 Poranen MM, 56:521-38 Hsieh P, 57:579-608 Leclerc H, 55:201—34 Preston LA, 54:289-340 Lee I-M, 54:221-—55 I Levin PA, 57:125—54 R Imlay JA, 57:395-418 Lindquist S, 56:703-41 Rainey PB, 58:207-31 Ingraham JL, 55:1-19 Loeb LA, 58:183-—205 Raivio TL, 55:591-624 Ishihama A, 54:499-518 Rall GF, 57:343-67 M Ramakrishnan L, 57:641-76 J Macnab RM, 57:77—100 Ramos JL, 56:743-68 Jacobs-Wagner C, 57:225-47 Magee PT, 54:463-98; Ramos-Gonzalez MI, Jahn CL, 56:489-520 55:743-72 56:743-68 Jazwinski SM, 56:769-92 Makarova KS, 55:709-42 Rappé MS, 57:369-94 Jendrossek D, 56:403—32 Mann BJ, 56:39-64 Ratledge C, 54:881--941 Jetten MSM, 58:99-117 Manz W, 54:81—127 Rawlings DE, 56:65-91 Jgrgensen BB, 55:105—37 Marahiel MA, 58:453-88 Reams AB, 58:119-42 Marczynski GT, 56:625—56 Redpath S K Mattick JS, 56:289-314 Reitzer L, 57:155—76 Kaiser D, 58:75-98 McBride MJ, 55:49-75 Rhee Y, 54:187-219 Kamhawi S, 55:453-83 McCormick JK, 55:77—104 Rhodius V, 56:599-624 Kaper JB, 54:641-—79 McVey Ward D, 56:237-61 Richardson JM, 57:57—76 Kaplan HB, 54:49-79 Mendoza L, 56:315—44 Riley M, 54:341-411 Kaplan J, 56:237-61 Miller MB, 55:165—99 Riley MA, 56:117-37 Kassen R, 58:207-31 Mock M, 55:647-71 Ritz D, 55:21-48 Kazmierczak BI, 55:407—35 Moore PS, 57:609-—39 Robertson GT, 57:57-—76 Keeling PJ, 56:93-116 Mossel DA, 55:201-—34 Rojas A, 56:743-68 Kelman Z, 57:487-516 Mostov K, 55:407-—35 Romberg L, 57:125—54 Kent AD, 56:21 1-36 Murphy BJ, 57:323-42 Roop RM II, 57:57—76 Khanna R, 54:19-48 Rosenberg E, 58:143-—59 Klobutcher LA, 56:489-520 N Kohn LM, 56:139-65 Nair SP, 57:29-55 Kolenbrander PE, Nechaev S, 57:301—22 54:413-37 Neidle EL, 58:119-42 CONTRIBUTING AUTHORS 737 Schiller NL, 54:289-340 Strous M, 58:99-117 Ww Schleifer K-H, 54:81—127 Struijk CB, 55:201-34 Walker CM, 58:391-—424 Schlievert PM, 55:77—104 Stiilke J, 54:849-80 Walsh TR, 56:657-—75 Schofield MJ, 57:579-608 Summers WC, 55:437-51 Wandersman C, Schulz HN, 55:105—37 Swanson MS, 58:611-47 Segura A, 56:743-68 54:567-613 Wang I-N, 54:799-825 Sen GC, 55:255-81 Szewzyk R, 54:81-—127 Ward JM, 57:29-55 Senejani AG, 56:263-87 Szewzyk U, 54:81—127 Waters AP, 54:157-85 Serres MH, 54:341-411 Wayne LG, 55:139-63 Severinov K, 57:301-—22 4 Wertz JE, 56:117—37 Shapiro L, 56:625-56 Talbot NJ, 57:177—202 Wilson M, 57:29-—55 Sherman DR, 57:641—76 Tan M-W, 56:539-65 Winkler ME, 57:57-76 Shoham Y, 58:521-554 Taylor JW, 56:315—44 Withey JH, 57:101-—23 Shoukry NH, 58:391-424 Teran W, 56:743-68 Witkin EM, 56:1—15 Silhavy TJ, 55:591-624 Triplett EW, 56:211-36 Wong TY, 54:289-340 Singh PK, 57:677-701 Tzfira T, 54:187-—219 Wosten HA, 55:625—46 Smidt H, 58:43-73 Wright A, 54:681-708 U Smith DL, 54:799-825 Y Smith GL, 57:323-42 Uptain SM, 56:703-41 Sohaskey CD, 55:139-63 Yarwood JM, 55:77—104 V Spaink HP, 54:257-88 Yonath A, 58:233-51 Spratt BG, 55:561—90 van Burik JH, 55:743-72 Young R, 54:799-825 Squires CL, 54:775—98 Van Dyk TK, 56:599-624 Stephen JR, 55:485-529 van Gijsegem F, 54:735—74 Z Stoodley P, 56:187-—209 Van Ho A, 56:237-61 Zaporojets D, 54:775—98 Storz G, 54:439-61 Vetting MW, 58:555-85 Zhaxybayeva O, 56:263-87 CHAPTER TITLES, VOLUMES 54-58 Prefatory Chapters The Life and Times of a Clinical Microbiologist A Balows Learning to Fly Fish JL Ingraham Chances and Choices: Cold Spring Harbor 1944-1955 EM Witkin Gathering No Moss J Davies Pickles, Pectin, and Penicillin AL Demain Animal Pathogens and Diseases The Development of Genetic Tools for Dissecting the Biology of Malaria Parasites AP Waters, 54:157-85 TF de Konig-Ward, CJ Janse Bacterial Virulence Gene Regulation: An Evolutionary Perspective PA Cotter, 54:519-65 VJ DiRita Legionella Pneumophila Pathogenesis: A Fateful Journey from Amobae to Macrophages MS Swanson, 54:567-613 BK Hammer The Disease Spectrum of Helicobacter pylori: The Immunopathogenesis of Gastroduodenal Ulcer and Gastric Cancer PB Ernst, BD Gold 54:615—40 Assembly and Function of Type III Secretory Systems G Cornelis, F van Gijsegem Toxic Shock Syndrome and Bacterial Superantigens: An Update JK McCormick, JM Yarwood, PM Schlievert Nonreplicating Persistence of Mycobacterium tuberculosis G Wayne, 55:139-63 CD Sohaskey Interaction of Bacterial Pathogens with Polarized Epithelium BI Kazmierczak, 55:407-35 K Mostov, JN Engel CHAPTER TITLES 739 Molecular Aspects of Parasite-Vector and Vector-Host Interactions in Leishmaniasis D Sacks, S Kamhawi Recombination and the Population Structures of Bacterial Pathogens EJ Feii, BG Spratt 55:561-90 Anthrax M Mock, A Fouet 55:647-71 Bioterrorism: From Threat to Reality RM Atlas 56:167-85 Molecular Pathogenicity of the Oral Opportunistic Pathogen Actinobacillus actinomycetemcomitans B Henderson, SP Nair, JM Ward, M Wilson Brucella Stationary-Phase Gene Expression and Virulence RM Roop II, JM Gee, 57:57-76 GT Robertson, JM Richardson, W-L Ng, ME Winkler Measles Virus 1998-2002: Progress and Controversy GF Rall 57:343-67 Molecular Genetics of Mycobacterium tuberculosis Pathogenesis JE Clark-Curtiss, 57:517-49 SE Haydel Kaposi’s Sarcoma—Associated Herpesvirus Immunoevasion and Tumorigenesis: Two Sides of the Same Coin? PS Moore, 57:609-39 Y Chang The Secret Lives of the Pathogenic Mycobacteria CL Cosma, DR Sherman, L Ramakrishnan Herpes Vector-Mediated Gene Transfer in Treatment of Diseases of the Nervous System JC Glorioso, DJ Fink Johne’s Disease, Inflammatory Bowel Disease, and Mycobacterium paratuberculosis O Chacon, 58:329-63 LE Bermudez, RG Barletta Molecular and Cellular Basis of Bartonella Pathogenesis C Dehio 58:365-90 Molecular Determinants of Listeria monocytogenes Virulence O Dussurget, 58:587-610 J Pizarro-Cerda, P Cossart 740 CHAPTER TITLES Applied Microbiology and Ecology Advances in the Bacteriology of the Coliform Group: Their Suitability as Markers of Microbial Water Safety H Leclerc, 55:201-34 DA Mossel, SC Edberg, CB Struijk A Community of Ants, Fungi, and Bacteria: A Multilateral Approach to Studying Symbiosis CR Currie 55:357-80 Ammonia-Oxidizing Bacteria: A Model for Molecular Microbial Ecology GA Kowalchuk, 55:485-529 JR Stephen Hydrophobins: Multipurpose Proteins HAB Wéosten 55:625—46 Heavy Meta! Mining Using Microbes DE Rawlings 56:65-91 Bacteriocins: Evolution, Ecology, and Application MA Riley, JE Wertz 56:117-37 On the Trail of a Cereal Killer: Exploring the Biology of Magnaporthe grisea NJ Talbot 57:177-202 The Uncultured Microbial Majority MS Rappé, 57:369-94 SJ Giovannoni Anaerobic Microbial Dehalogenation H Smidt, 58:43-73 WM de Vos Anaerobic Oxidation of Methane and Ammonium M Strous, 58:99-117 MSM Jetten Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase CK Brown, MW Vetting, CA Earhart, DH Ohlendorf Bacterial Iron Sources: From Siderophores to Hemophores C Wandersman, 58:611-47 P Delepelaire Chemotherapy and Chemotherapeutic Agents Bacterial Fatty Acid Biosynthesis: Targets for Antibacterial Drug Discovery JW Campbell, 55:305-32 JE Cronan Jr Bacteriophage Therapy WC Summers 55:437-51 Evolution of Drug Resistance in Candida albicans E Cowen, 56:139-65 JB Anderson, LM Kohn CHAPTER TITLES 741 The Prevalence and Mechanisms of Vancomycin Resistance in Staphylococcus aureus TR Walsh, RA Howe 56:657-75 Ribosomal Crystallography: Initiation, Peptide Bond Formation, and Amino Acid Polymerization are Hampered by Antibiotics A Yonath, A Bashan 58:233-51 Biosynthesis of Nonribosomal Peptides R Finking, 58:453-88 MA Marahiel Diversity and Systematics Oral Microbial Communities: Biofilms, Interactions, and Genetic Systems PE Kolenbrander 54:413-37 Pathogenicity Islands and the Evolution of Microbes JB Kaper, J Hacker $4:641-79 HOLINS: The Protein Clocks of Bacteriophage Infections R Young, I-N Wang, 54:799-825 DL Smith Big Bacteria HN Schulz, 55:105—37 BB Jgrgensen What Are Bacterial Species? FM Cohan 56:457-87 Archaeal DNA Replication: Eukaryal Proteins in a Bacterial Context B Grabowski, 57:487-516 Z Kelman The Ecology and Genetics of Microbial Diversity R Kassen, 58:207-31 PB Rainey Early Molecular Investigations of Lichen-Forming Symbionts: 1986-2001 PT DePriest 58:273-301 Endangered Antarctic Environments DA Cowan, 58:649-90 L Ah Tow Genetics and Physiology The Adaptive Mechanisms of Trypanosoma brucei for Stercl Homeostasis in Its Different Life-Cycle Environments I Coppens, 54:129-56 PJ Courtoy Nucleic Acid Transport in Plant-Microbe Interactions: The Molecules That Walk Through the Walls V Citovsky 54:187-219 T Tzfira, Y Rhee, M Chen, T Kunik Interim Report on Genomics of Escherichia coli M Riley, MH Serres 54:341-411 742 CHAPTER TITLES Roles of the Glutathione- and Thioredoxin-Dependent Reduction Systems in the Escherichia coli and Saccharomyces cerevisiae Responses to Oxidative Stress G Storz, 54:439-61 O Carmel-Harel Recent Developments in Molecular Genetics of Candida Albicans MD De Backer, 54:463-98 PT Magee, J Pla Functional Modulation of Escherichia Coli RNA Polymerase A Ishihama 54:499-518 DNA Segregation in Bacteria A Wright, GS Gordon 54:68 1-708 Proteins Shared by the Transcription and Translation Machines CL Squires, 54:775-98 D Zaporojets Oxygen Respiration by Desulfovibrio Species H Cypionka 54:827-48 Iron Metabolism in Pathogenic Bacteria C Ratledge, LG Dover 54:881-941 Roles of Thiol-Redox Pathways in Bacteria D Ritz, J Beckwith 55:21-48 Bacterial Gliding Motility: Multiple Mechanisms for Cell Movement over Surfaces MJ McBride 55:49-75 Quorum Sensing in Bacteria MB Miller, 55:165-99 BL Bassler Homology-Dependent Gene Silencing Mechanisms in Fungi C Cogoni 55:381—406 Periplasmic Stress and EFC Sigma Factors TL Raivio, TJ Silhavy 55:59 1-624 Horizontal Gene Transfer in Prokaryotes—Quantification and Classification EV Koonin, 55:709-42 KS Makarova, L Aravind Inteins: Structure, Function, and Evolution JP Gogarten, 56:263-87 AG Senejani, O Zhaxybayeva, L Olendzenski, E Hilario Genome Remodeling in Ciliated Protozoa CL Jahn, 56:489-520 LA Klobutcher Bacterial Chromosome Segregation GC Draper, 56:567-97 JW Gober Impact of Genomic Technologies on Studies of Bacterial Gene Expression V Rhodius, 56:599-624 TK Van Dyk, C Gross, RA LaRossa CHAPTER TITLES 743 Control of Chromosome Replication in Caulobacter crescentus GT Marczynski, 56:625-56 L Shapiro Prions as Protein-Based Genetic Elements SM Uptain, 56:703-41 S Lindquist Growing Old: Metabolic Control and Yeast Aging SM Jazwinski 56:769-92 Molecular Pathogenicity of the Oral Opportunistic Pathogen Actinobacillus actinomycetemcomitans B Henderson, 57:29-55 SP Nair, JM Ward, M Wilson A Salvage Pathway for Protein Synthesis: tmRNA and Trans-Translation JH Withey, 57:101-23 DI Friedman Assembly Dynamics of the Bacterial Cell Division Protein FtsZ: Poised at the Edge of Stability Romberg, PA Levin 57:125-54 Spatial and Temporal Control of Differentiation and Cell Cycle Progression in Caulobacter crescentus N Ausmees, 57:225-47 C Jacobs-Wagner Transposable Elements in Filamentous Fungi M-J Daboussi, P Capy 57:275-99 Bacteriophage-Induced Modifications of Host RNA Polymerase S Nechaev, 57:301-22 K Severinov Gene Organization: Selection, Selfishness, and Serendipity JG Lawrence 57:419-40 Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space TM Gruber, CA Gross Natural Selection and the Emergence of a Mutation Phenotype: An Update of the Evolutionary Synthesis Considering Mechanisms that Affect Genome Variation H Caporale 57:467-85 Archaeal DNA Replication: Eukaryal Proteins in a Bacterial Context B Grabowski, 57:487-516 Z Kelman Molecular Genetics of Mycobacterium tuberculosis Pathogenesis JE Clark-Curtiss, 57:517-49 SE Haydel The Bacterial RecA Protein as a Motor Protein MM Cox 57:551-77 744 CHAPTER TITLES DNA Mismatch Repair: Molecular Mechanisms and Biological Function MJ Schofield, 57:579-608 P Hsieh Bacterial Biofilms: An Emerging Link to Disease Pathogenesis MR Parsek, PK Singh 57:677-701 Anaerobic Microbial Dehalogenation H Smidt, WM de Vos 58:43-73 Signaling in Myxobacteria D Kaiser 58:75-98 Anaerobic Oxidation of Methane and Ammonium M Strous, 58:99-117 MSM Jetten Selection for Gene Clustering by Tandem Duplication AB Reams, EL Neidle 58:119-42 Viral Error Catastrophe by Mutagenic Nucleosides JP Anderson, 58:183-205 R Daifuku, LA Loeb The Ecology and Genetics of Microbial Diversity R Kassen, PB Rainey Ribosomal Crystallography: Initiation, Peptide Bond Formation, and Amino Acid Polymerization are Hampered by Antibiotics A Yonath, A Bashan 58:233-51 Herpes Vector-Mediated Gene Transfer in Treatment of Diseases of the Nervous System JC Glorioso, DJ Fink 58:253-71 The Small RNA Regulators of Escherichia coli: Roles and Mechanisms S Gottesman 58:303-28 Recent Advances in the Characterization of Ambient pH Regulation of Gene Expression in Filamentous Fungi and Yeasts MA Pefialva, 58:425-S1 HN Arst Jr. Biosynthesis of Nonribosomal Peptides R Finking, 58:453--88 MA Marahiel Circadian Rhythms in Microorganisms: New Complexities PL Lakin-Thomas, 58:489-519 S Brody Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase CK Brown, 58:555-85 MW Vetting, CA Earhart, DH Ohlendorf Bacterial Iron Sources: From Siderophores to Hemophores C Wandersman, 58:611-47 P Delepelaire